Metabolic capabilities are highly conserved among human nasal-associated Corynebacterium species in pangenomic analyses

Published in mSystems https://doi.org/10.1128/msystems.01132-24

Input data files provided here.

Supplemental Methods:

• Supplemental methods for program installations.

• Supplemental methods for Prokka annotations of 107 Corynebacterium strain genomes.

• Supplemental methods of pangenome analyses performed with GET_HOMOLOGUES, GET_PHYLOMARKERS and IQ-TREE2.

• Supplemental methods for the anvi’o pangenomic and metabolic analysis.

• Supplemental methods of COG anvi’o annotated gene clusters assignments to the persistent or accessory genome with PPanGGOLiN analysis.

• Supplemental methods for COG functional analysis based on PPanGGOLiN partitions:

  • Corynebacterium propinquum

  • Corynebacterium pseudodiphtheriticum

  • Corynebacterium accolens

  • Corynebacterium tuberculostearicum

• Supplemental methods for the glycogen acumulation analysis.

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