RSVBac
  1. References
  • Overview
  • Bacterial CFUs
  • RSV PFUs
  • RSV RT-qPCR
  • Caspase
  • RNASeq
  • Cytokines
  • R Session Info
  • References

References

Anders, S. and Huber, W. (2010). Differential expression analysis for sequence count data. Genome Biology 11,.
Danecek, P., Bonfield, J. K., Liddle, J., Marshall, J., Ohan, V., Pollard, M. O., Whitwham, A., Keane, T., McCarthy, S. A., Davies, R. M., et al. (2021). Twelve years of SAMtools and BCFtools. GigaScience 10,.
Dobin, A., Davis, C. A., Schlesinger, F., Drenkow, J., Zaleski, C., Jha, S., Batut, P., Chaisson, M. and Gingeras, T. R. (2012). STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29, 15–21.
Huber, W., Heydebreck, A. von, Sueltmann, H., Poustka, A. and Vingron, M. (2003). Parameter estimation for the calibration and variance stabilization of microarray data. Statistical Applications in Genetics and Molecular Biology 2,.
Korotkevich, G., Sukhov, V., Budin, N., Shpak, B., Artyomov, M. N. and Sergushichev, A. (2016). Fast gene set enrichment analysis.
Li, B. and Dewey, C. N. (2011). RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics 12,.
Liberzon, A., Birger, C., Thorvaldsdóttir, H., Ghandi, M., Mesirov, Jill P. and Tamayo, P. (2015). The Molecular Signatures Database Hallmark Gene Set Collection. Cell Systems 1, 417–425.
Oksanen, J., Simpson, G. L., Blanchet, F. G., Kindt, R., Legendre, P., Minchin, P. R., O’Hara, R. B., Solymos, P., Stevens, M. H. H., Szoecs, E., et al. (2024). Vegan: Community ecology package.
Soneson, C., Love, M. I. and Robinson, M. D. (2015). Differential analyses for RNA-seq: Transcript-level estimates improve gene-level inferences. 4,.
Stephens, M. (2016). False discovery rates: a new deal. Biostatistics kxw041.
Subramanian, A., Tamayo, P., Mootha, V. K., Mukherjee, S., Ebert, B. L., Gillette, M. A., Paulovich, A., Pomeroy, S. L., Golub, T. R., Lander, E. S., et al. (2005). Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. Proceedings of the National Academy of Sciences 102, 15545–15550.
Tibshirani, R. (1988). Estimating Transformations for Regression via Additivity and Variance Stabilization. Journal of the American Statistical Association 83, 394–405.
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