Description of two novel Corynebacterium species isolated from human nasal passages and skin
  1. References
  • Introduction
  • Methods
    • Prokka Annotations
    • Average Nucleotide Identity (ANI)
    • Phylogenies
    • Anvio
  • References

References

Delmont, T. O. and Eren, A. M. (2018). Linking pangenomes and metagenomes: the Prochlorococcus metapangenome. PeerJ 6, e4320.
Eren, A. M., Kiefl, E., Shaiber, A., Veseli, I., Miller, S. E., Schechter, M. S., Fink, I., Pan, J. N., Yousef, M., Fogarty, E. C., et al. (2020). Community-led, integrated, reproducible multi-omics with anvi’o. Nature Microbiology 6, 3–6.
Hyatt, D., Chen, G.-L., LoCascio, P. F., Land, M. L., Larimer, F. W. and Hauser, L. J. (2010). Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 11,.
Kanehisa, M. (2000). KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Research 28, 27–30.
Kanehisa, M., Furumichi, M., Sato, Y., Kawashima, M. and Ishiguro-Watanabe, M. (2022). KEGG for taxonomy-based analysis of pathways and genomes. Nucleic Acids Research 51, D587–D592.
Seemann, T. (2014). Prokka: rapid prokaryotic genome annotation. Bioinformatics 30, 2068–2069.
Veseli, I., Chen, Y. T., Schechter, M. S., Vanni, C., Fogarty, E. C., Watson, A. R., Jabri, B., Blekhman, R., Willis, A. D., Yu, M. K., et al. (2023). Microbes with higher metabolic independence are enriched in human gut microbiomes under stress. biorxiv.
Anvio
Source Code
# References {.unnumbered}

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